Glycine and Serine Metabolism
SMPDB_ID
SMP0000004
PW_ID
PW000157
图片
主题
Metabolic
描述
This pathway describes the synthesis and breakdown of a number of small amino acids, including glycine, serine, and cysteine. All of these compounds share common intermediates and almost all can be biosynthesized from one another. Serine and glycine are not essential amino acids and can be synthesized from a number of routes. For example, serine can be synthesized via glycerate, which can be converted to glycerate 3-phosphate (via glycerate kinase), which in turn is converted to phosphohydroxypyruvate and then phosphoserine and finally serine. The serine synthesized via this route, can create cysteine and glycine through the homocysteine cycle. Cystathionine beta-synthase catalyses the condensation of homocysteine and serine to give cystathionine. Cystathionine beta-lyase then converts this double amino acid to cysteine, ammonia, and α-ketoglutarate. Serine can also be used in polypeptide synthesis (via Seryl-tRNA synthetase) or in phosphatidylserine synthesis. Glycine is biosynthesized in the body from the amino acid serine. In most organisms, the enzyme serine hydroxymethyltransferase catalyses this transformation using tetrahydrofolate (THF), leading to methylene THF and glycine. Glycine can be degraded via three pathways. The predominant pathway in animals involves the Glycine Cleavage System. This leads to the degradation of glycine into ammonia and CO2. In the second pathway, glycine is degraded in two steps. The first step is the reverse of glycine biosynthesis from serine with serine hydroxymethyl transferase. Serine is then converted to pyruvate by serine dehydratase. In the third route to glycine degradation, glycine is converted to glyoxylate by D-amino acid oxidase. Glyoxylate is then oxidized by hepatic lactate dehydrogenase to oxalate in an NAD+-dependent reaction. Glycine also functions as an inhibitory neurotransmitter in the central nervous system.
代谢物
SMPDB ID代谢物id代谢物的名字
SMP0000004 PW_C000075 Glyoxylic acid
SMP0000004 PW_C001043 Hydroxypyruvic acid
SMP0000004 PW_C000003 2-Ketobutyric acid
SMP0000004 PW_C000448 L-Cysteine
SMP0000004 PW_C000067 L-Cystathionine
SMP0000004 PW_C001875 D-Serine
SMP0000004 PW_C000170 Pyrophosphate
SMP0000004 PW_C000032 Adenosine monophosphate
SMP0000004 PW_C000423 Magnesium
SMP0000004 PW_C001104 Phosphate
SMP0000004 PW_C000134 Oxoglutaric acid
SMP0000004 PW_C000186 Phosphoserine
SMP0000004 PW_C000095 L-Glutamic acid
SMP0000004 PW_C000810 Phosphohydroxypyruvic acid
SMP0000004 PW_C001034 Adenosine diphosphate
SMP0000004 PW_C000644 3-Phosphoglyceric acid
SMP0000004 PW_C000414 Adenosine triphosphate
SMP0000004 PW_C000090 Glyceric acid
SMP0000004 PW_C001005 Zinc (II) ion
SMP0000004 PW_C000548 L-Methionine
SMP0000004 PW_C000590 Homocysteine
SMP0000004 PW_C000030 Betaine
SMP0000004 PW_C000894 5-Aminolevulinic acid
SMP0000004 PW_C000808 Succinyl-CoA
SMP0000004 PW_C000046 Creatine
SMP0000004 PW_C000921 S-Adenosylmethionine
SMP0000004 PW_C000749 S-Adenosylhomocysteine
SMP0000004 PW_C000144 Orotidylic acid
SMP0000004 PW_C000083 Guanidoacetic acid
SMP0000004 PW_C000396 L-Arginine
SMP0000004 PW_C001178 5,10-Methylene-THF
SMP0000004 PW_C007757 Dihydrolipoate
SMP0000004 PW_C001221 Tetrahydrofolic acid
SMP0000004 PW_C008526 8-[(Aminomethyl)sulfanyl]-6-sulfanyloctanoic acid
SMP0000004 PW_C001120 (R)-lipoic acid
SMP0000004 PW_C000185 Sarcosine
SMP0000004 PW_C001102 Formaldehyde
SMP0000004 PW_C000062 Dimethylglycine
SMP0000004 PW_C001148 Pyridoxal 5'-phosphate
SMP0000004 PW_C001099 Coenzyme A
SMP0000004 PW_C000078 Glycine
SMP0000004 PW_C000940 Acetyl-CoA
SMP0000004 PW_C001316 Carbon dioxide
SMP0000004 PW_C002747 L-2-Amino-3-oxobutanoic acid
SMP0000004 PW_C001144 NADH
SMP0000004 PW_C000164 Pyruvic acid
SMP0000004 PW_C000721 NAD
SMP0000004 PW_C000964 FAD
SMP0000004 PW_C000905 Pyruvaldehyde
SMP0000004 PW_C001783 Hydrogen peroxide
SMP0000004 PW_C000035 Ammonia
SMP0000004 PW_C001420 Water
SMP0000004 PW_C001065 Oxygen
SMP0000004 PW_C001435 Aminoacetone
SMP0000004 PW_C000105 L-Alanine
SMP0000004 PW_C000120 L-Serine

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