版本
5.0
创建日期
2005-11-16 15:48:42 UTC
更新日期
2020-04-23 20:56:37 UTC
登录号
HMDB0000241
地位
quantified
二级访问
HMDB00241

名称
Protoporphyrin IX
描述
Protoporphyrins are tetrapyrroles containing 4 methyl, 2 propionic, and 2 vinyl side chains. Protoporphyrin is produced by oxidation of the methylene bridge of protoporphyrinogen. Protoporphyrin IX is the only naturally occurring isomer; it is an intermediate in heme biosynthesis, combining with ferrous iron to form protoheme IX, the heme prosthetic group of hemoglobin. Protoporphyrin IX is created by the enzyme protoporphyrinogen oxidase. The enzyme ferrochelatase converts it into heme. Protoporphyrin IX naturally occurs in small amounts in feces. Protoporphyrin IX is also responsible for the brown pigment (ooporphyrin) of birds' eggs. Protoporphyrin IX is used as a branch point in the biosynthetic pathway leading to heme (by insertion of iron) and chlorophylls (by insertion of Mg and further side-chain transformation). Protoporphyrin IX can be used to treat liver disorders, mainly as the sodium salt. Under certain conditions, protoporphyrin IX can act as a neurotoxin, a phototoxin, and a metabotoxin. A neurotoxin causes damage to nerve cells and nerve tissues. A phototoxin causes cell damage upon exposure to light. A metabotoxin is an endogenously produced metabolite that causes adverse health effects at chronically high levels. Chronically high levels of porphyrins are associated with porphyrias such as porphyria variegate, acute intermittent porphyria, and hereditary coproporphyria (HCP). In particular, it is accumulated and excreted excessively in the feces in acute intermittent porphyria, protoporphyria, and variegate porphyria. There are several types of porphyrias (most are inherited). Hepatic porphyrias are characterized by acute neurological attacks (seizures, psychosis, extreme back and abdominal pain, and an acute polyneuropathy), while the erythropoietic forms present with skin problems (usually a light-sensitive blistering rash and increased hair growth). The neurotoxicity of porphyrins may be due to their selective interactions with tubulin, which disrupt microtubule formation and cause neural malformations (PMID: 3441503).
同义词
1:3,3'-(3,7,12,17-Tetramethyl-8,13-divinyl-21H,23H-porphine-2,18-diyl)-bis-propionic acid

2:3,7,12,17-Tetramethyl-8,13-divinylporphyrin-2,18-dipropanoic acid

3:H2PpIX

4:Kammerer's prophyrin

5:Ooporphyrin

6:Porphyrinogen IX

7:3,3'-(3,7,12,17-Tetramethyl-8,13-divinyl-21H,23H-porphine-2,18-diyl)-bis-propionate

8:3,7,12,17-Tetramethyl-8,13-divinylporphyrin-2,18-dipropanoate

9:3,3'-(3,7,12,17-Tetramethyl-8,13-divinylporphine-2,18-diyl)di

10:PpIX

11:Protoporphyrin

12:Protoporphyrin-"ix"

13:Protoporphyrin-IX

化学式
C34H34N4O4
平均分子量
562.6582
等位分子量
562.258005596
化学名称
3-[20-(2-carboxyethyl)-9,14-diethenyl-5,10,15,19-tetramethyl-21,22,23,24-tetraazapentacyclo[16.2.1.1^{3,6}.1^{8,11}.1^{13,16}]tetracosa-1(21),2,4,6,8(23),9,11,13,15,17,19-undecaen-4-yl]propanoic acid
传统名称
3-[20-(2-carboxyethyl)-9,14-diethenyl-5,10,15,19-tetramethyl-21,22,23,24-tetraazapentacyclo[16.2.1.1^{3,6}.1^{8,11}.1^{13,16}]tetracosa-1(21),2,4,6,8(23),9,11,13,15,17,19-undecaen-4-yl]propanoic acid
CAS 登记号
553-12-8
代谢物结构字符串
CC1=C(CCC(O)=O)/C2=C/C3=N/C(=C\C4=C(C)C(C=C)=C(N4)/C=C4\N=C(\C=C\1/N\2)C(C=C)=C4C)/C(C)=C3CCC(O)=O
inchi标识符
InChI=1S/C34H34N4O4/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25/h7-8,13-16,35,38H,1-2,9-12H2,3-6H3,(H,39,40)(H,41,42)/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-
印记键
KSFOVUSSGSKXFI-UJJXFSCMSA-N
分类学
description: belongs to the class of organic compounds known as porphyrins. Porphyrins are compounds containing a fundamental skeleton of four pyrrole nuclei united through the alpha-positions by four methine groups to form a macrocyclic structure.

description:Porphyrins

kingdom:Organic compounds

super_class:Organoheterocyclic compounds

class:Tetrapyrroles and derivatives

sub_class:Porphyrins

molecular_framework:

本体论
term:Physiological effect

definition:The effect on an organism physiology, resulting from its exposure to a chemical.

parent_id:

level:1

type:parent

term:Health effect

definition:A health condition or observation associated with a stimuli or with a biological activity of a chemical.

parent_id:7693

*level:2

type:parent

term:Health condition

definition:A health effect that consists on short or long-term disease, condition, disorder, syndrome or constant abnormality.

parent_id:7694

**level:3

type:parent

term:Porphyria

definition:An inherited metabolic disorder that involves certain enzymes in the heme bio-synthetic pathway resulting in the overproduction and accumulation of the porphyrins. (do).

parent_id:7695

***level:4

type:child

term:Hereditary coproporphyria

definition:

parent_id:7695

***level:4

type:child

synonym:Hcp

term:Disposition

definition:A concept that describes the origin of a chemical, its location within an organism, or its route of exposure.

parent_id:

level:1

type:parent

term:Route of exposure

definition:A mean by which a chemical agent comes in contact with an organism, either under intended or unintended circumstances.

parent_id:7724

*level:2

type:parent

term:Enteral

definition:Chemical exposure via the alimentary canal (mouth to anus).

parent_id:7743

**level:3

type:parent

term:Ingestion

definition:Chemical exposure facilitated by entry through the mouth.

parent_id:7744

***level:4

type:child

synonym:Digestion

term:Source

definition:Natural or synthetic origin of a chemical.

parent_id:7724

*level:2

type:parent

term:Endogenous

definition:

parent_id:7735

**level:3

type:child

term:Food

definition:

parent_id:7735

**level:3

type:child

term:Biological

definition:A living organism (species or a higher taxonomy rank), in which a chemical can be found.

parent_id:7735

**level:3

type:parent

term:Plant

definition:A living organism belonging to the kingdom plantea. typically, it grows in a permanent site, absorbs water and inorganic substances through its roots, and synthesizes nutrients in its leaves by photosynthesis using the green pigment chlorophyll. examples incude trees, shrubs, herbs, grasses, ferns, and mosses.

parent_id:7736

***level:4

type:child

synonym:Flora

term:Biological location

definition:The physiological origin within an organism, including anatomical compnents, biofluids and excreta.

parent_id:7724

*level:2

type:parent

term:Cell and elements

definition:An anatomical organizational level comprising of a single cell (or a fragment in some exceptions). a cell is defined by its type or function. it is the smallest unit of living structure capable of independent existence, composed of a membrane-enclosed mass of protoplasm and containing a nucleus or nucleoid.

parent_id:7725

**level:3

type:parent

term:Cell

definition:

parent_id:7732

***level:4

type:parent

term:Element

definition:

parent_id:7732

***level:4

type:parent

term:Tissue and substructures

definition:An anatomical organizational level including multiple cells yet not comprising a complete organ .

parent_id:7725

**level:3

type:parent

term:Adipose tissue

definition:A specialized form of connective tissue consisting primarily of adipocytes (fat cells), surrounded by a meshwork of collagen fibers. (NCI)

parent_id:7729

***level:4

type:child

synonym:Fat tissue

synonym:Body fat

synonym:Adipose

term:Epidermis

definition:The epithelial portion of the skin (cutis). it consists of the following layers: stratum corneum (horny layer), stratum granulosum (granular layer), stratum spinosum (prickle cell layer), and stratum basale (basal cell layer). (nci).

parent_id:7729

***level:4

type:child

term:Organ and components

definition:An anatomical organizational level including multiple tissues or substructures, which enables a common biological function.

parent_id:7725

**level:3

type:parent

term:Intestine

definition:The portion of the gastrointestinal tract that includes the small and large intestines.

parent_id:7727

***level:4

type:child

term:Testicle

definition:Either of the paired male reproductive glands that produce the male germ cells and the male hormones. (nci).

parent_id:7727

***level:4

type:child

synonym:Testes

synonym:Testis

term:Spleen

definition:An abdominal organ that is part of the hematopoietic and immune systems. it is composed of the white pulp and the red pulp and is surrounded by a capsule. (nci).

parent_id:7727

***level:4

type:child

term:Bladder

definition:The distensible sac-like organ that functions as a reservoir of urine, collecting from the kidneys and eliminating via the urethra. (nci).

parent_id:7727

***level:4

type:child

term:Liver

definition:An abdominal organ that has variable lobation which are composed mainly of hepatic lobules. (nci).

parent_id:7727

***level:4

type:child

term:Skin

definition:An organ that constitutes the external surface of the body. it consists of the epidermis, dermis, and skin appendages. (nci).

parent_id:7727

***level:4

type:child

term:Kidney

definition:The organs of the urinary tract located in the retroperitoneal cavity adjacent to the spine and composed of the renal cortex and the renal medulla. (nci).

parent_id:7727

***level:4

type:child

synonym:Kidneys

term:Endocrine gland

definition:

parent_id:7727

***level:4

type:parent

term:Biofluid and excreta

definition:A liquid, semi-solid or solid material originating in the body.

parent_id:7725

**level:3

type:parent

term:Blood

definition:A liquid tissue with the primary function of transporting oxygen and carbon dioxide (nci). it supplies the tissues with nutrients, removes waste products, and contains various components of the immune system defending the body against infection.

parent_id:7731

***level:4

type:child

term:Subcellular

definition:An anatomical organizational level including a component within a biological cell .

parent_id:7725

**level:3

type:parent

term:Cytoplasm

definition:The portion of the cell contained within the plasma membrane but excluding the nucleus.

parent_id:7730

***level:4

type:child

synonym:Cytoplasma

term:Membrane

definition:

parent_id:7730

***level:4

type:child

term:Mitochondria

definition:

parent_id:7730

***level:4

type:child

term:Cell membrane

definition:A cellular compartment that separates a cellВ interiorВ from its exterior.

parent_id:7730

***level:4

type:child

synonym:Cellular membrane

term:Process

definition:Biological or chemical events, or a series thereof, leading to a known function or end-product.

parent_id:

level:1

type:parent

term:Naturally occurring process

definition:Naturally-occurring molecular events or a series thereof, leading to a known function or end-product.

parent_id:7659

*level:2

type:parent

term:Biological process

definition:Biological or chemical events or a series thereof, leading to a known function or end-product within an organism.

parent_id:7660

**level:3

type:parent

term:Biochemical pathway

definition:A linked series of chemical reactions that occur in a defined order within or between organism cells, and lead to a known function or end product.

parent_id:7661

***level:4

type:parent

term:Role

definition:The purpose or function assumed by a chemical, either naturally or as intended by humans .

parent_id:

level:1

type:parent

term:Indirect biological role

definition:An indirect function of a chemical which affect the physiological state of any organism (apart from the source organism, if of biological source).

parent_id:7671

*level:2

type:parent

term:Neurotoxin

definition:A chemical substance that interferes with the normal functioning of the nervous system.

parent_id:7691

**level:3

type:child

synonym:Neurotoxic

synonym:Neurotoxic agent

term:Phototoxin

definition:A chemical substance that leads to cell damage upon exposure to light.

parent_id:7691

**level:3

type:child

term:Metabotoxin

definition:An endogenous metabolite that causes adverse health effects at chronically high levels.

parent_id:7691

**level:3

type:child

term:Biological role

definition:The biological function of a chemical. the biological role answers the question how a chemical is involved in molecular processes in an organism. this can include biochemical effects of non-endogenous chemicals, which are also assigned an industrial application such as pharmaceuticals. the biological role is limited to cellular levls, and will not include role at system process level, such as a chemical which has a role in a disease.

parent_id:7671

*level:2

type:parent

term:Metabolite

definition:A chemical substance produced during metabolism process, as an intermediate or end-product.

parent_id:7672

**level:3

type:child

term:Industrial application

definition:The assumed function of a chemical utilized by human.

parent_id:7671

*level:2

type:parent

term:Pharmaceutical industry

definition:A pharmacologic activity for which a chemical substance is utilized owing to its biological role.

parent_id:7678

**level:3

type:parent

term:Pharmaceutical

definition:

parent_id:7679

***level:4

type:child

term:Photosensitizing agent

definition:A chemical substance that can be excited by light of a specific wavelength and subsequently transfer energy to a chosen reactant. (chebi).

parent_id:7679

***level:4

type:child

状态
Solid
实验性质
1:

kind:water_solubility

value:0.169 mg/mL at 25 °C

source:

2:

kind:melting_point

value:300 °C

source:

预测性质
1:

kind:logp

value:4.40

source:ALOGPS

2:

kind:logs

value:-4.41

source:ALOGPS

3:

kind:solubility

value:0.022 g/L

source:ALOGPS

4:

kind:logp

value:6.78

source:ChemAxon

5:

kind:pka_strongest_acidic

value:3.68

source:ChemAxon

6:

kind:pka_strongest_basic

value:4.96

source:ChemAxon

7:

kind:iupac

value:3-[20-(2-carboxyethyl)-9,14-diethenyl-5,10,15,19-tetramethyl-21,22,23,24-tetraazapentacyclo[16.2.1.1^{3,6}.1^{8,11}.1^{13,16}]tetracosa-1(21),2,4,6,8(23),9,11,13,15,17,19-undecaen-4-yl]propanoic acid

source:ChemAxon

8:

kind:average_mass

value:562.6582

source:ChemAxon

9:

kind:mono_mass

value:562.258005596

source:ChemAxon

10:

kind:smiles

value:CC1=C(CCC(O)=O)/C2=C/C3=N/C(=C\C4=C(C)C(C=C)=C(N4)/C=C4\N=C(\C=C\1/N\2)C(C=C)=C4C)/C(C)=C3CCC(O)=O

source:ChemAxon

11:

kind:formula

value:C34H34N4O4

source:ChemAxon

12:

kind:inchi

value:InChI=1S/C34H34N4O4/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25/h7-8,13-16,35,38H,1-2,9-12H2,3-6H3,(H,39,40)(H,41,42)/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-

source:ChemAxon

13:

kind:inchikey

value:KSFOVUSSGSKXFI-UJJXFSCMSA-N

source:ChemAxon

14:

kind:polar_surface_area

value:131.96

source:ChemAxon

15:

kind:refractivity

value:163.81

source:ChemAxon

16:

kind:polarizability

value:66.03

source:ChemAxon

17:

kind:rotatable_bond_count

value:8

source:ChemAxon

18:

kind:acceptor_count

value:6

source:ChemAxon

19:

kind:donor_count

value:4

source:ChemAxon

20:

kind:physiological_charge

value:-2

source:ChemAxon

21:

kind:formal_charge

value:0

source:ChemAxon

22:

kind:number_of_rings

value:5

source:ChemAxon

23:

kind:bioavailability

value:No

source:ChemAxon

24:

kind:rule_of_five

value:No

source:ChemAxon

25:

kind:ghose_filter

value:No

source:ChemAxon

26:

kind:veber_rule

value:No

source:ChemAxon

27:

kind:mddr_like_rule

value:Yes

source:ChemAxon

光谱
生物学性质
1:

cellular:(1):Cytoplasm

cellular:(2):Membrane

cellular:(3):Mitochondria

2:

biospecimen:(1):Blood

3:

tissue:(1):Adipose Tissue

tissue:(2):Adrenal Medulla

tissue:(3):Bladder

tissue:(4):Epidermis

tissue:(5):Erythrocyte

tissue:(6):Fibroblasts

tissue:(7):Intestine

tissue:(8):Kidney

tissue:(9):Leukocyte

tissue:(10):Liver

tissue:(11):Platelet

tissue:(12):Spleen

tissue:(13):Testis

tissue:(14):Thyroid Gland

4:

[1]:

name:Acute Intermittent Porphyria

smpdb_id:SMP00344

kegg_map_id:

[2]:

name:Congenital Erythropoietic Porphyria (CEP) or Gunther Disease

smpdb_id:SMP00345

kegg_map_id:

[3]:

name:Hereditary Coproporphyria (HCP)

smpdb_id:SMP00342

kegg_map_id:

[4]:

name:Porphyria Variegata (PV)

smpdb_id:SMP00346

kegg_map_id:

[5]:

name:Porphyrin Metabolism

smpdb_id:SMP00024

kegg_map_id:map00860

正常浓度
1:

biospecimen:Blood

concentration_value:0.66 +/- 0.18

concentration_units:uM

subject_age:Adult (>18 years old)

subject_sex:Female

subject_condition:Normal

2:

biospecimen:Blood

concentration_value:0.53 +/- 0.13

concentration_units:uM

subject_age:Adult (>18 years old)

subject_sex:Male

subject_condition:Normal

3:

biospecimen:Blood

concentration_value:1.09 +/- 0.57

concentration_units:uM

subject_age:Newborn (0-30 days old)

subject_sex:Both

subject_condition:Normal

异常浓度
1:

biospecimen:Blood

concentration_value:0-1.244

concentration_units:uM

patient_age:Adult (>18 years old)

patient_sex:Male

patient_information:Protoporphyria, Erythropoietic

疾病参考
1:

name:Protoporphyria, Erythropoietic

omim_id:177000

[1]:

reference_text:MAGNUS IA, JARRETT A, PRANKERD TA, RIMINGTON C: Erythropoietic protoporphyria. A new porphyria syndrome with solar urticaria due to protoporphyrinaemia. Lancet. 1961 Aug 26;2(7200):448-51.

pubmed_id:13765301

KEGG数据库编号
C02191
DrugBank数据库编号
DB02285
foodb数据库编号
FDB004277
ChemSpider数据库编号
10469486
公共化学化合物编号
PDB数据库编号
生物利益的化学实体数据库编号
15430
knapsack数据库编号
C00007370
维基百科编号
Protoporphyrin_IX
代谢途径的数据库编号
PROTOPORPHYRIN_IX
苯酚资源管理器化合物数据库编号
比格数据库编号
梅林编号
虚拟机身份证编号
PPP9
fbonto数据库编号
综合参考
Games, David E.; Jackson, Anthony H.; Jackson, J. Richard; Belcher, Roderick V.; Smith, Sydney G. Biosynthesis of protoporphyrin-IX from coproporphyrinogen-III. Journal of the Chemical Society, Chemical Communications (1976), (6), 187-8.
一般参考
1:

protein_accession:HMDBP00251

name:Coproporphyrinogen-III oxidase, mitochondrial

uniprot_id:P36551

gene_name:CPOX

protein_type:Unknown

2:

protein_accession:HMDBP01021

name:Protoporphyrinogen oxidase

uniprot_id:P50336

gene_name:PPOX

protein_type:Unknown

3:

protein_accession:HMDBP01058

name:Ferrochelatase, mitochondrial

uniprot_id:P22830

gene_name:FECH

protein_type:Unknown

4:

protein_accession:HMDBP02077

name:Ferritin light chain

uniprot_id:P02792

gene_name:FTL

protein_type:Unknown

5:

protein_accession:HMDBP09176

name:Ferrochelatase

uniprot_id:Q53FU1

gene_name:

protein_type:Enzyme

6:

protein_accession:HMDBP09179

name:Ferrochelatase

uniprot_id:Q5TZY0

gene_name:

protein_type:Enzyme

7:

protein_accession:HMDBP09180

name:Ferrochelatase

uniprot_id:Q7KZA3

gene_name:DKFZp686P18130

protein_type:Enzyme

蛋白质结合
1:

reference_text:Messmann H, Knuchel R, Baumler W, Holstege A, Scholmerich J: Endoscopic fluorescence detection of dysplasia in patients with Barrett's esophagus, ulcerative colitis, or adenomatous polyps after 5-aminolevulinic acid-induced protoporphyrin IX sensitization. Gastrointest Endosc. 1999 Jan;49(1):97-101.

pubmed_id:9869731

2:

reference_text:Stankiewicz A, Lutz W, Krajewska B, Szulc B: [Plasma indicators of iron metabolism in persons occupationally exposed to organic solvents with normal and increased levels of protoporphyrin IX in erythrocytes]. Pol Tyg Lek. 1986 Jul 7;41(27):851-4.

pubmed_id:3763462

3:

reference_text:Stankiewicz A: [Erythrocyte protoporphyrin IX in occupational exposure to asbestos]. Med Pr. 1984;35(5):351-4.

pubmed_id:6530952

4:

reference_text:Sudworth CD, Stringer MR, Cruse-Sawyer JE, Brown SB: Fluorescence microspectroscopy technique for the study of intracellular protoporphyrin IX dynamics. Appl Spectrosc. 2003 Jun;57(6):682-8.

pubmed_id:14658702

5:

reference_text:Kufner G, Schlegel H, Jager R: A spectrophotometric micromethod for determining erythrocyte protoporphyrin-IX in whole blood or erythrocytes. Clin Chem Lab Med. 2005;43(2):183-91.

pubmed_id:15843214

6:

reference_text:Stankiewicz A: The concentration of protoporphyrin IX in workers occupationally exposed to lead. Mater Med Pol. 1989 Apr-Jun;21(2):100-2.

pubmed_id:2488459

7:

reference_text:Krieg RC, Fickweiler S, Wolfbeis OS, Knuechel R: Cell-type specific protoporphyrin IX metabolism in human bladder cancer in vitro. Photochem Photobiol. 2000 Aug;72(2):226-33.

pubmed_id:10946577

8:

reference_text:Bailey GG, Needham LL: Simultaneous quantification of erythrocyte zinc protoporphyrin and protoporphyrin IX by liquid chromatography. Clin Chem. 1986 Dec;32(12):2137-42.

pubmed_id:3779978

9:

reference_text:Chisolm J Jr, Brown DH: Micro-scale photofluorometric determination of "free erythrocyte pophyrin" (protoporphyrin IX). Clin Chem. 1975 Oct;21(11):1669-82.

pubmed_id:1164799

10:

reference_text:Casas A, Batlle AM, Butler AR, Robertson D, Brown EH, MacRobert A, Riley PA: Comparative effect of ALA derivatives on protoporphyrin IX production in human and rat skin organ cultures. Br J Cancer. 1999 Jul;80(10):1525-32.

pubmed_id:10408393

11:

reference_text:Smits T, Robles CA, van Erp PE, van de Kerkhof PC, Gerritsen MJ: Correlation between macroscopic fluorescence and protoporphyrin IX content in psoriasis and actinic keratosis following application of aminolevulinic acid. J Invest Dermatol. 2005 Oct;125(4):833-9.

pubmed_id:16185285

12:

reference_text:Bartosova J, Hrkal Z: Accumulation of protoporphyrin-IX (PpIX) in leukemic cell lines following induction by 5-aminolevulinic acid (ALA). Comp Biochem Physiol C Toxicol Pharmacol. 2000 Jul;126(3):245-52.

pubmed_id:11048674

13:

reference_text:Sakai T, Takeuchi Y, Ikeya Y, Araki T, Ushio K: [Automated HPLC method for determining zinc protoporphyrin IX and protoporphyrin IX in erythrocytes of workers exposed to lead]. Sangyo Igaku. 1988 Nov;30(6):467-74.

pubmed_id:3221502

14:

reference_text:Stankiewicz A, Lutz W, Szeszko A: [Protoporphyrin IX level in erythrocytes of persons with alcoholic liver cirrhosis]. Pol Tyg Lek. 1985 Jul 15;40(28):787-9.

pubmed_id:4059100

15:

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